Phd Position F/m Novel Computational Methods for

il y a 3 semaines

Rennes, France Inria Temps plein

Le descriptif de l’offre ci-dessous est en Anglais_

**Type de contrat **:CDD

**Niveau de diplôme exigé **:Bac + 5 ou équivalent

**Fonction **:Doctorant

**A propos du centre ou de la direction fonctionnelle**:
The Inria Centre at Rennes University is one of Inria's eight centres and has more than thirty research teams. The Inria Centre is a major and recognized player in the field of digital sciences. It is at the heart of a rich R&D and innovation ecosystem: highly innovative PMEs, large industrial groups, competitiveness clusters, research and higher education players, laboratories of excellence, technological research institute, etc.

**Contexte et atouts du poste**:
The emergence of modern DNA sequencing technologies has revolutionized the life sciences. However, the exponential growth of sequencing data outpaces the expansion of computational capacities, making traditional search methods such as Basic Local Alignment Search Tool (BLAST) [1] and its successors increasingly less effective. To keep up with the volumes of sequencing data being generated, we need novel sublinear approaches that could store and analyze data directly in the compressed domain. However, while it has been shown that genomic data have particular geometrical properties that guarantee the existence of such efficient algorithms [2], [3], the compression of exponentially growing genome collections in a scalable manner remains an unsolved challenge.

A novel approach, called phylogenetic compression, has recently been proposed to address this challenge [4]. The technique builds upon the insight that the redundancies in genomic data have, in fact, a highly predictable structure, mirroring the underlying evolutionary processes. As the evolutionary history of genomes can be rapidly estimated, this history can be embedded directly into the compression and search algorithms to increase their efficiency and scalability. The preliminary results demonstrated remarkable improvements over the state-of-the-art compression methods and suggested its applicability to many diverse data structures across bioinformatics [4].

[1] S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, “Basic local alignment search tool,” J. Mol. Biol., vol. 215, no. 3, pp. 403-410, Oct. 1990.

[2] P.R. Loh, M. Baym, and B. Berger, “Compressive genomics,” Nat. Biotechnol., vol. 30, no. 7, pp. 627-630, Jul. 2012.

[3] Y. W. Yu, N. M. Daniels, D. C. Danko, and B. Berger, “Entropy-scaling search of massive biological data,” Cell Syst, vol. 1, no. 2, pp. 130-140, Aug. 2015.

[4] K. Břinda et al., “Efficient and Robust Search of Microbial Genomes via Phylogenetic Compression,” bioRxiv, Apr. 2023, doi: 10.1101/2023.04.15.536996.

**Mission confiée**:
**Avantages**:

- Subsidized meals
- Partial reimbursement of public transport costs
- Possibility of teleworking (90 days per year) and flexible organization of working hours
- Partial payment of insurance costs

**Rémunération**:
Monthly gross salary amounting to 2100 euros for the first and second years and 2200 euros for the third year

**Informations générales**:

- **Thème/Domaine**: Biologie numérique
- **Ville**: Rennes
- **Centre Inria**: Centre Inria de l'Université de Rennes
- **Date de prise de fonction souhaitée**: 2024-09-01
- **Durée de contrat**: 3 ans
- **Date limite pour postuler**: 2024-04-05

**Consignes pour postuler**:
Please submit online : your resume, cover letter and letters of recommendation eventually

**Sécurité défense**:
Ce poste est susceptible d’être affecté dans une zone à régime restrictif (ZRR), telle que définie dans le décret n°2011-1425 relatif à la protection du potentiel scientifique et technique de la nation (PPST). L’autorisation d’accès à une zone est délivrée par le chef d’établissement, après avis ministériel favorable, tel que défini dans l’arrêté du 03 juillet 2012, relatif à la PPST. Un avis ministériel défavorable pour un poste affecté dans une ZRR aurait pour conséquence l’annulation du recrutement.

**Politique de recrutement**:
Dans le cadre de sa politique diversité, tous les postes Inria sont accessibles aux personnes en situation de handicap.

**Contacts**:

- **Équipe Inria**: GENSCALE
- **Directeur de thèse**:
**A propos d'Inria**:
Inria est l’institut national de recherche dédié aux sciences et technologies du numérique. Il emploie 2600 personnes. Ses 215 équipes-projets agiles, en général communes avec des partenaires académiques, impliquent plus de 3900 scientifiques pour relever les défis du numérique, souvent à l’interface d’autres disciplines. L’institut fait appel à de nombreux talents dans plus d’une quarantaine de métiers différents. 900 personnels d’appui à la recherche et à l’innovation contribuent à faire émerger et grandir des projets scientifiques ou entrepreneuriaux qui impactent le monde. Inria travaille avec de nombreuses entreprises et a

  • Phd Position at Ietr

    il y a 5 jours

    Rennes, France INSTITUT NATIONAL DES SCIENCES APPLIQUEES Temps plein

    **PhD Position at IETR - Ecodesign of Embedded Systems applied to Smart Vision**: - Réf **ABG-123956** - Sujet de Thèse- 17/05/2024- Contrat doctoral- INSTITUT NATIONAL DES SCIENCES APPLIQUEES- Lieu de travail- Rennes - Bretagne - France- Intitulé du sujet- PhD Position at IETR - Ecodesign of Embedded Systems applied to Smart Vision- Champs...

  • Phd Positions in Rennes

    il y a 4 semaines

    Rennes, France IGDR Université Rennes Temps plein

    **PhD positions in Rennes (France), life sciences**: - Réf - **ABG-110607** - Sujet de Thèse- 30/01/2023- Contrat doctoral- IGDR Université Rennes- Lieu de travail- Rennes - Bretagne - France- Intitulé du sujet- PhD positions in Rennes (France), life sciences- Champs scientifiques- Biologie - Biochimie - Santé, médecine humaine, vétérinaire - Mots...

  • Igdr Phd Call

    il y a 1 mois

    Rennes, France Institut de Génétique et Développement de Rennes (IGDR) Temps plein

    **IGDR PhD call - 4 to 8 positions**: - Réf - **ABG-119675** - Sujet de Thèse- 24/01/2024- Contrat doctoral- Institut de Génétique et Développement de Rennes (IGDR)- Lieu de travail- Rennes - Bretagne - France- Intitulé du sujet- IGDR PhD call - 4 to 8 positions- Champs scientifiques- Biologie - Biochimie - Santé, médecine humaine, vétérinaire -...

  • PhD Position F/M Multimodal Segmentation of Chronic Stroke Lesions

    il y a 1 mois

    Rennes, France INRIA Temps plein

    Contexte et atouts du poste Co-director : Elise Bannier, IR UR, Empenn Co-director : Elisa Fromont, PR UR, Lacodam Co-supervisor : Francesca Galassi, MCF UR, Empenn Co-supervisor : Stéphanie Leplaideur, Medical Doctor, Centre de KERPAPE The selected PhD candidate will have the opportunity to join the research lab Empenn at Inria-Irisa, located...

  • Phd Position at Ietr

    il y a 5 jours

    Rennes, France INSA RENNES Temps plein

    **About us**: INSA Rennes, a founding member of the INSA Group, is the largest public engineering school in Brittany. It welcomes 2,200 students and apprentices and graduates more than 340 engineers, 60 masters and 40 PhDs per year. Composed of 10 teaching departments, including 7 specialties and an apprenticeship program, and supervised by 6 research...

  • Development of a Hybrid Machine Learning Model for

    il y a 6 jours

    Rennes, France LTSI - UMR INSERM 1099 Temps plein

    **Development of a hybrid machine learning model for predicting response to cardiac resynchronization therapy**: - Réf **ABG-123925** - Sujet de Thèse- 16/05/2024- Financement public/privé- LTSI - UMR INSERM 1099- Lieu de travail- Rennes - Bretagne - France- Intitulé du sujet- Development of a hybrid machine learning model for predicting response to...

  • Phd Contract

    il y a 4 semaines

    Rennes, France Institut de Génétique et Développement de Rennes (IGDR) Temps plein

    **PhD contract**: - Réf **ABG-121836** - Sujet de Thèse- 26/03/2024- Contrat doctoral- Institut de Génétique et Développement de Rennes (IGDR)- Lieu de travail- Rennes - Bretagne - France- Intitulé du sujet- PhD contract- Champs scientifiques- Biologie - Biochimie - Santé, médecine humaine, vétérinaire - Mots clés- Molecular Biology, Cellular...

  • Phd Positions in Rennes

    il y a 4 semaines

    Rennes, France Institute of Genetics and Development of Rennes (IGDR) Temps plein

    The IGDr (Institute of Genetics & Development of Rennes) is seeking 5 to 7 motivated PhD students, starting October, 2023. At the IGDR, PhD students will benefit from a dynamic and interactive research environment, and from the IGDR seminar program which attracts national and international speakers. Within the PhD program, the PhD students will also develop...

  • Phd Positions in Rennes

    il y a 1 mois

    Rennes, France Institute of Genetics and Development of Rennes (IGDR) Temps plein

    The IGDr (Institute of Genetics & Development of Rennes) is seeking 4 to 8 motivated PhD students, starting October, 2024. PhD students will conduct their research within one of the 15 teams of the IGDR. Cutting-edge training will be offered on topics encompassing the two main research axes of the IGDR: “Genetics, Genomics and Cancer” and “Cell...

  • PhD Position F/M Reliability and Security of Large Foundation Models

    il y a 1 mois

    Rennes, France INRIA Temps plein

    PhD Position F/M Reliability and Security of Large Foundation Models Le descriptif de l’offre ci-dessous est en Anglais Type de contrat : CDD Niveau de diplôme exigé : Bac + 5 ou équivalent Fonction : Doctorant A propos du centre ou de la direction fonctionnelle The Inria Rennes - Bretagne Atlantique Centre is one of...

  • PhD Position F/M Enabling Scientific Workflow Composition in Large-Scale Distributed Infrastructures

    il y a 4 jours

    Rennes, France INRIA Temps plein

    Contexte et atouts du poste Supervisory Team Silvina Caino-Lores, PhD (Inria, France) Gabriel Antoniu, PhD, HDR (Inria, France) Location and Mobility The thesis will be hosted by the KerData team at the Inria research center of Rennes. Rennes is the capital city of Britanny, in the western part of France. It is easy to reach thanks to...

  • Theory of The Complex Luminescence Properties of

    il y a 1 mois

    Rennes, France Université de Rennes Institut des Sciences Chimiques de Rennes Temps plein

    **Theory of the complex luminescence properties of actinides**: - Réf **ABG-122986** - Sujet de Thèse- 17/04/2024- Contrat doctoral- Université de Rennes / Institut des Sciences Chimiques de Rennes- Lieu de travail- Rennes - Bretagne - France- Intitulé du sujet- Theory of the complex luminescence properties of actinides- Champs scientifiques-...

  • Phd Position F/m Latency-driven Resources Placement

    il y a 4 semaines

    Rennes, France Inria Temps plein

    Le descriptif de l’offre ci-dessous est en Anglais_ **Type de contrat **:CDD **Niveau de diplôme exigé **:Bac + 5 ou équivalent **Fonction **:Doctorant **A propos du centre ou de la direction fonctionnelle**: The Inria Rennes - Bretagne Atlantique Centre is one of Inria's eight centres and has more than thirty research teams. The Inria Center is a...

  • Phd Position F/m Reliability and Security of Large

    il y a 4 semaines

    Rennes, France Inria Temps plein

    Le descriptif de l’offre ci-dessous est en Anglais_ **Type de contrat **:CDD **Niveau de diplôme exigé **:Bac + 5 ou équivalent **Fonction **:Doctorant **A propos du centre ou de la direction fonctionnelle**: The Inria Rennes - Bretagne Atlantique Centre is one of Inria's eight centres and has more than thirty research teams. The Inria Center is a...

  • Researcher in the field of Inverter Systems for Motor Drive applications

    il y a 4 jours

    Rennes, Ille-et-Vilaine, France Mitsubishi Electric R&D Centre Europe - France Temps plein

    Context and description:MERCE is committed to research technologies in the field of power electronics. We are passionate about creating innovative and dependable electric power systems that offer exceptional performance and efficiency. Our goal is to deliver the most effective and cutting-edge technology solutions to an energy-wise society.Conducting...

  • Researcher in the field of Inverter Systems for Motor Drive applications

    il y a 1 mois

    Rennes, France Mitsubishi Electric R&D Centre Europe - France Temps plein

    Context and description:MERCE is committed to research technologies in the field of power electronics. We are passionate about creating innovative and dependable electric power systems that offer exceptional performance and efficiency. Our goal is to deliver the most effective and cutting-edge technology solutions to an energy-wise society.Conducting...

  • Researcher in the field of Inverter Systems for Motor Drive applications

    il y a 2 jours

    Rennes, France Mitsubishi Electric R&D Centre Europe - France Temps plein

    Context and description:MERCE is committed to research technologies in the field of power electronics. We are passionate about creating innovative and dependable electric power systems that offer exceptional performance and efficiency. Our goal is to deliver the most effective and cutting-edge technology solutions to an energy-wise society.Conducting...

  • Doctorant F/H Anatomical and microstructure informed tractography for connectivity evaluation

    il y a 1 mois

    Rennes, France INRIA Temps plein

    Contexte et atouts du poste Diffusion MRI (dMRI) quantifies the diffusion of water molecules (constrained by their environment), enabling us to infer a number of microstructure parameters, such as the arrangement of nerve fibers, the different tissues making them up and their properties (axon diameter, proportion of neuronal cell bodies, etc.)....

  • R&D Engineer in Physic and Chemistry, PhD

    il y a 4 semaines

    Rennes, France Sweetch Energy Temps plein

    About usSweetch Energy is a renewable energy player specialising in osmotic energy, committed to a carbon neutral world. Based in Rennes, our journey started in 2015 and we are proud to build a net zero future by exploiting a massively available, yet untapped, natural source of energy: osmotic power.Thanks to our INOD® technology, osmotic power will become...

  • R&D Engineer

    il y a 3 heures

    Rennes, France TASTE Temps plein

    TASTE is an innovative, independent and friendly recruitment consultancy positioned since 2004 in the market of expert executives (middle-top management).The CEO is looking at integrating a doctoral engineer in research and with a focus in waste heat, to work alongside him to bring their current technology to the next level, through innovation and...