Bioinformatics Specialist
il y a 4 semaines
We are seeking a highly skilled Bioinformatics Scientist to join our team at Genomines, a young biotechnology company based in Paris and Saclay. As a Bioinformatics Scientist, you will play a crucial role in our mission to usher in a new era of sustainable mining by using genetically enhanced plants to extract metals from soil.
About UsGenomines is a pioneering company that harnesses the power of synthetic biology and cutting-edge technology to create bioengineered plants that can extract metals while decontaminating soils and creating cleaner lands for agriculture. Our ultimate goal is to become the world's first carbon-neutral mining group, using sustainable and environmentally friendly methods to extract the precious resources our society needs.
Key Responsibilities- Conduct complex genome assemblies, focusing on non-bacterial and non-fungal organisms, with a preference for plant or animal genomes.
- Perform structural and functional annotation of transposable elements.
- Critically analyze automated processing workflows.
- Assemble transcriptomes to explore differences between mutants and original organisms.
- Apply RNAseq techniques and lead transcriptomic analyses across one or multiple factors, with or without a reference genome.
- Establish and conduct quality control procedures.
- Utilize pipeline managers like Snakemake or Nextflow and configure and manage isolated development environments.
- Ensure effective genomic data traceability and associated IT process backups.
- Documentation and Reporting: Keep accurate documentation and produce research reports.
- Technical Support: Assist in preparing data for analysis and managing databases.
- PhD degree in molecular biology, bioinformatics, or a related field.
- Fluent in English (both written and spoken); additional language skills are advantageous.
- Understand best practices in reproducible science, including tool version control and crafting quality reports, along with developing data management plans.
- Experienced in plant genetic engineering techniques such as CRISPR and bacterium-mediated transformation, with a focus on optimization.
- Demonstrated experience in assembling non-bacterial and non-fungal genomes, preferably plant or animal genomes.
- Skilled in RNAseq analysis, annotation, and database management.
- Proficient with IT tools for independent process management, including familiarity with software licensing and usage rights.
- Proficient in Linux.
- Skilled in Programming Tools and Languages (Competent with GitHub/GitLab for code versioning and Proficient in programming languages like Python and Shell/Bash).
- Knowledgeable in short reads/long reads sequencing technologies.
- Familiar with computing and storage systems, including experience with computing clusters and data storage and backup solutions like OVH.
- Collaborative team player with effective communication skills.
- Demonstrates scientific rigor and meticulous attention to detail.
- Shows adaptability and a commitment to continuous learning.
- Possesses humility and openness to growth.
Location: On-site position in Paris-Saclay, 91400
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