Senior Software Engineer
il y a 2 semaines
We are seeking a highly skilled Senior Software Engineer to join our team at the Image Analysis Hub (IAH) of the Institut Pasteur. As a research engineer in biological image analysis, you will contribute to the development of image processing pipelines and computational infrastructure for (cryo-) electron microscopy (EM) and photonic imaging.
About the Image Analysis HubThe Image Analysis Hub is an open access, equal access core facility committed to offering support in image analysis for the Institut Pasteur campus. Our engineers collaborate with users of the campus and beyond, helping them on their projects with bioimage analysis. We connect to the imaging cores of the campus and work with them on innovative methods for Biology.
MissionThe IAH wishes to expand the scope of its activities and support research projects that are based on electron microscopy images. The mission associated with this position consists of:
- The development of image pre-processing pipelines and computational infrastructure to harness data generated in cryo electron microscopy, performing e.g. CTF correction, denoising, filtering, multi-modal correlation, and tomography reconstruction.
- Offering image analysis services to the campus, for imaging modalities involving EM image data and fluorescence microscopy image data.
The suitable candidate:
- Holds an engineering or master's degree in (bio)informatics, (bio)physics, applied mathematics, or any other related domain, followed by at least 3 years of professional experience in bioimage analysis in research or support to research activity.
- Or holds a PhD in bioinformatics, (bio)physics, applied mathematics, or any other related domain.
Required skills:
- Strong experience with image processing, data visualization, and scientific software development.
- Good knowledge of relevant Image Analysis techniques.
- Good programming skills (most relevant are Python, Java, C/C++).
Desired skills:
- Experience with biological imaging is a plus, in particular with EM.
- Experience in cryo-EM and cryo tomography data analysis is a plus as well.
- Experience with workflow management tools.
The Institut Pasteur provides an exciting environment for engineers to pursue scientific endeavors, located in the vibrant city of Paris. At Pasteur, you will find a thriving community of research engineers who benefit from a well-defined and esteemed career trajectory, along with exceptional working conditions. Additionally, the campus grants access to state-of-the-art high-performance computing servers, advanced instruments, and opportunities for collaboration with pioneering life scientists, presenting innovative challenges.
How to ApplyPlease prepare a CV, a cover letter with references, and a link to a public code repository, and apply using the official application website. We highly value diversity and inclusion, and we encourage individuals from all segments of the community to apply. We are open to discussing various types of flexible working arrangements.
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