Senior Engineer Biological Image Analysis

Il y a 2 mois


Paris e, France ICM Institut du Cerveau Temps plein

**Job description (mission)**
- Development of advanced image analysis algorithms for the analysis of (histological) images from electron and photon microscopes
- Translation of research questions regarding image analysis, including preprocessing, segmentation, classification and reporting of (statistical) features
- Integrating and automatizing image analysis as part of our NGS bioinformatics pipelines
- Coordination and participation in transversal projects together with the histology platform (Histomics), the sequencing platform (iGenSeq), the neuroimaging facility (CENIR) and research teams throughout the institute
- Coordination and collaboration on image analyses across the institute
- Investigate and respond to the needs of the institute regarding image analyses, providing scientific and strategic advice of the highest scientific ambition
- Document and teach image analysis

**PROFILE**

**Know-how (savoir-faire)**
- Fluency in manipulation, visualization and conversion of images, including high-res (pyramidal) formats
- Deep understanding of deep learning / machine learning / AI procedures in biological image analysis, including cell segmentation and differentiation (2D and 3D), detection of co-localization, morphological studies, temporal tracking of objects over time, and visualization and interaction with high-res (pyramidal) images
- Experience with spatial transcriptomics technology, such as Visium (10X Genomics), GeoMX DSP (Nanostring) or Merscope (Vizgen) is desired but not required

**Knowledge (savoir)**
- PhD in computer science/biostatistics/bio-informatics with a focus on machine learning in (biological/medical) image analysis
- Image analysis in Python (required) and R/MATLAB/C/C++ (highly desired)
- Project management using Gitlab

**Soft skills (savoir-être)**
- Autonomy to quickly learn new methods adapted to the wide variety of data
- Ability to integrate into a multi-disciplinary team with team spirit, and a collaborative working style
- Ability to communicate with researchers and staff from different scientific/clinical backgrounds
- Strong organizational, project management and communication skills
- Excellent interpersonal skills
- Excellent command of academic English
- Conversational French desired but not required

Type d'emploi : Temps plein, CDI
Statut : Cadre

Salaire : à partir de 33 000,00€ par an

Avantages:

- Participation au transport
- RTT

Programmation:

- Travail en journée

Formation:

- Bac +8 (Doctorat) (Optionnel)

Expérience:

- Ingénierie: 1 an (Optionnel)

Langue:

- Anglais (Optionnel)

Lieu du poste : En présentiel

Date de début prévue : 03/04/2023



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